Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2289DUF790-containing protein. (406 aa)    
Predicted Functional Partners:
cce_4442
Probable DNA repair helicase.
 
 
   0.913
cce_0895
Hypothetical protein; Contains helicase, C-terminal, Type III restriction enzyme, res subunit and DEAD/DEAH box helicase, N-terminal domains.
 
 
   0.800
cce_3128
Unknown.
  
     0.750
cce_3225
Conserved hypothetical protein.
  
     0.730
cce_2728
Conserved hypothetical protein.
  
     0.714
cce_1914
Unknown.
  
     0.707
cce_3140
Unknown.
  
     0.706
cce_1715
Conserved hypothetical protein.
  
     0.704
cce_3158
Ferrochelatase-like protein; Belongs to the ferrochelatase family.
  
     0.698
cce_0506
Unknown.
  
     0.667
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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