STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2297Binding protein dependent transport systems inner membrane component. (349 aa)    
Predicted Functional Partners:
cce_4492
OppC in a binding protein-dependent transport system.
 
 0.975
oppC
Peptide transport system permease protein.
 
 0.974
cce_0124
Putative ABC transporter, oligopeptides.
 
 0.960
cce_2386
ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.942
cce_2619
ABC transporter, substrate binding protein, possibly oligopeptides.
 
 0.937
cce_3634
ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.933
cce_0779
Extracellular solute-binding protein, family 5.
 
 
 0.925
cce_3340
Extracellular solute-binding protein, family 5.
 
 
 0.844
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
      0.838
cce_2296
Conserved hypothetical protein.
       0.810
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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