Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxYHydrogenase small subunit. (181 aa)    
Predicted Functional Partners:
hoxH
Hydrogenase large subunit.
 
 
 0.997
hoxU
Hydrogenase chain U.
   
 0.996
hoxF
NADH dehydrogenase I chain F.
   
 
 0.993
hoxE
Probable NADH dehydrogenase I chain E.
 
 
 
 0.973
hupL
[NiFe] uptake hydrogenase large subunit.
  
 
 0.878
cce_4408
Hypothetical protein; Contains a peptidase M52, hydrogen uptake protein domain.
 
  
 0.849
cce_3352
Unknown; Contains a coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal domain.
  
 
 0.743
cce_4662
Unknown; Contains a coenzyme F420 hydrogenase/dehydrogenase beta subunit domain.
  
 
 0.743
cce_3228
Heterodisulfide reductase, subunit B.
  
 
 0.729
cce_0546
Hypothetical protein; Contains a thioredoxin fold domain.
   
 
 0.686
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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