STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
todF2-hydroxy-6-oxohepta-2,4-dienoate hydrolase. (289 aa)    
Predicted Functional Partners:
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 
 0.897
cce_3078
Polyketide synthase.
  
 
 0.794
cce_3079
Probable polyketide synthase.
  
 
 0.780
cce_1153
Esterase.
  
     0.752
cce_0777
Putative hydrolase.
  
     0.737
cce_4504
Unknown; Contains an alpha/beta hydrolase fold-1 domain.
  
     0.701
cce_2337
Group 2 sigma-70 RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.541
cce_0745
Esterase.
  
     0.535
cce_1466
Probable AMP-dependent synthetase and ligase.
   
 
 0.519
cce_4498
Probable alpha/beta hydrolase.
  
     0.503
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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