STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2360Hypothetical protein; Contains a Peptidase M23B and Peptidoglycan-binding domain. (320 aa)    
Predicted Functional Partners:
cce_5021
Hypothetical protein; Contains a peptidase M23B.
  
     0.774
cce_2663
Hypothetical protein; Contains a peptidase M23B domain.
  
     0.753
thrA
Homoserine dehydrogenase.
       0.752
slt
Probable soluble lytic transglycosylase.
 
  
 0.702
cce_3531
Penicillin-binding protein 1A.
  
     0.688
cce_4147
Penicillin-binding protein 1B.
 
   
 0.642
cce_2453
Penicillin-binding protein 1A.
  
     0.627
ftsZ
Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
   
 0.490
sucD
Putative succinyl-CoA synthetase alpha chain.
       0.490
cce_3444
Penicillin-binding protein.
 
   
 0.487
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.