Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2369Transposase IS200-like protein. (146 aa)    
Predicted Functional Partners:
cce_2368
Transposase.
 
     0.896
cce_1782
Putative transposase.
 
     0.767
cce_1950
Transposase.
 
     0.764
cce_2083
Transposase.
 
     0.760
cce_3466
Transposase.
 
     0.672
cce_0880
Hypothetical protein; Contains a transposase, IS605 OrfB domain.
 
     0.642
cce_1346
Hypothetical protein; Contains a transposase, IS605 OrfB domain.
 
     0.625
cce_2770
Hypothetical protein; Contains a transposase, IS605 OrfB, C-terminal domain.
 
     0.622
cce_2370
Hypothetical protein.
       0.473
cce_2371
Unknown.
       0.473
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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