Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cce_2386ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily. (548 aa)    
Predicted Functional Partners:
cce_0124
Putative ABC transporter, oligopeptides.
 
 0.991
oppC
Peptide transport system permease protein.
 
 0.991
cce_4492
OppC in a binding protein-dependent transport system.
 
 0.991
cce_0780
Permease protein of oligopeptide ABC transporter.
 
 0.957
cce_0991
Permease protein of ABC transporter.
 
 0.948
cce_2297
Binding protein dependent transport systems inner membrane component.
 
 0.942
cce_2619
ABC transporter, substrate binding protein, possibly oligopeptides.
 
 
 0.813
pta
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
    0.725
cce_0779
Extracellular solute-binding protein, family 5.
 
 
 0.684
cbiQ3
Putative cobalt ABC transporter permease protein.
  
 
 0.651
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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