STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2386ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily. (548 aa)    
Predicted Functional Partners:
cce_0124
Putative ABC transporter, oligopeptides.
  
 0.986
oppC
Peptide transport system permease protein.
  
 0.985
cce_4492
OppC in a binding protein-dependent transport system.
  
 0.985
cce_0780
Permease protein of oligopeptide ABC transporter.
  
 0.922
cce_0991
Permease protein of ABC transporter.
  
 0.906
cce_2297
Binding protein dependent transport systems inner membrane component.
  
 0.895
cce_2619
ABC transporter, substrate binding protein, possibly oligopeptides.
 
  
 0.762
cbiQ3
Putative cobalt ABC transporter permease protein.
  
 
 0.688
cbiQ2
Putative cobalt ABC transporter permease protein.
  
 
 0.688
cbiQ1
Putative cobalt ABC transporter permease protein.
  
 
 0.688
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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