STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2439Hypothetical protein; Contains a TrkA-N domain. (668 aa)    
Predicted Functional Partners:
cce_1093
Hypothetical protein; Contains a TROVE domain.
  
     0.635
trk
Probable K+ transporter.
  
 
 0.595
cce_1492
Hypothetical protein.
  
     0.587
cce_4849
Conserved hypothetical protein.
  
     0.570
cce_0908
Hypothetical protein; Contains a Lambda repressor-like, DNA-binding domain.
  
     0.566
cce_0540
Fmu, rRNA SAM-dependent methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.552
cce_1809
Conserved hypothetical protein.
  
     0.549
cce_3305
Hypothetical protein; Contains DUF820.
  
     0.533
cce_3191
Hypothetical protein; Contains DUF1239.
  
     0.526
cce_1860
Hypothetical protein.
  
     0.491
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.