STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amiA2N-acetylmuramoyl-L-alanine amidase. (615 aa)    
Predicted Functional Partners:
amiA1
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.928
cce_0133
Cell wall hydrolase/autolysin family protein.
  
  
 
0.912
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
   
 0.675
slt
Probable soluble lytic transglycosylase.
     
 0.590
cce_2458
Conserved hypothetical protein.
  
 
   0.535
cce_2468
Na+/H+ antiporter.
 
     0.527
cce_3263
Unknown.
  
     0.509
cce_0235
Unknown.
   
   0.491
cce_2189
Hypothetical protein.
   
   0.491
cinA
Competence-damage protein; Belongs to the CinA family.
 
     0.480
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.