Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2546Probable two-component sensor histidine kinase. (364 aa)    
Predicted Functional Partners:
cce_0678
Two-component response regulator.
 
 
   0.970
cce_0289
Two-component response regulator.
 
   0.961
cce_4578
Two-component response regulator.
 
     0.922
rpaA
Two-component response regulator.
 
 
 0.920
cce_0446
Two-component response regulator.
 
   0.908
kdpD
Potassium-transporting ATPase D chain.
 
  
   0.903
cce_1555
Unknown; Contains a GAF domain.
 
      0.900
rpaB
Two-component response regulator.
 
   0.899
cce_4183
Two-component response regulator.
 
 
   0.850
cce_1725
Two-component transcriptional regulatory protein.
   0.847
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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