STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2583Hypothetical protein; Contains DUF29. (154 aa)    
Predicted Functional Partners:
cce_0149
Probable protein phosphatase.
    
 0.894
cce_0620
Hypothetical protein; Contains DUF29.
  
     0.766
cce_5005
Hypothetical protein; Contains Helicase, C-terminal, Type III restriction enzyme, res subunit and DEAD/DEAH box helicase, N-terminal domains.
   
 0.738
cce_2584
Hypothetical protein; Contains a restriction endonuclease domain.
       0.634
cce_2585
Hypothetical protein.
       0.621
cce_1844
Unknown; Contains an EF-Hand type domain.
   
 0.553
cce_3500
Hypothetical protein; Contains an EF-Hand type domain.
    
 0.553
cce_3028
FKBP-type peptidyl-prolyl cis-trans isomerase.
    
 
 0.517
cce_2186
WD-40 repeat protein.
  
  0.505
cce_4519
Hypothetical protein; Contains a beta-lactamase-like domain.
   
   0.487
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.