STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2593Short-chain dehydrogenase/reductase SDR. (255 aa)    
Predicted Functional Partners:
cce_3121
caffeoyl-CoA O-methyltransferase.
 
  
   0.900
cce_4684
O-methyltransferase, family 3.
 
  
   0.784
cce_2592
NUDIX hydrolase.
   
   0.661
cce_2590
Hypothetical protein.
       0.636
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
      0.636
cce_3078
Polyketide synthase.
  
 
 0.594
cce_3079
Probable polyketide synthase.
  
 
 0.538
cce_2589
Acriflavin resistance protein.
       0.524
fabF
3-oxoacyl-[acyl-carrier-protein] synthase I/II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.520
cce_1466
Probable AMP-dependent synthetase and ligase.
  
 
 0.516
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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