Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cce_0072 | cce_0650 | cce_0072 | cce_0650 | UPF YGGT-containing protein. | UPF YGGT-containing protein. | 0.477 |
| cce_0072 | cce_1336 | cce_0072 | cce_1336 | UPF YGGT-containing protein. | Putative RNA-binding S4 protein. | 0.659 |
| cce_0072 | cce_2715 | cce_0072 | cce_2715 | UPF YGGT-containing protein. | UPF0001-containing protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.599 |
| cce_0072 | ftsZ | cce_0072 | cce_1314 | UPF YGGT-containing protein. | Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.639 |
| cce_0072 | sepF | cce_0072 | cce_2614 | UPF YGGT-containing protein. | Unknown; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.731 |
| cce_0650 | cce_0072 | cce_0650 | cce_0072 | UPF YGGT-containing protein. | UPF YGGT-containing protein. | 0.477 |
| cce_0650 | cce_1336 | cce_0650 | cce_1336 | UPF YGGT-containing protein. | Putative RNA-binding S4 protein. | 0.728 |
| cce_0650 | cce_2715 | cce_0650 | cce_2715 | UPF YGGT-containing protein. | UPF0001-containing protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.599 |
| cce_0650 | ftsZ | cce_0650 | cce_1314 | UPF YGGT-containing protein. | Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.639 |
| cce_0650 | sepF | cce_0650 | cce_2614 | UPF YGGT-containing protein. | Unknown; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.731 |
| cce_1336 | cce_0072 | cce_1336 | cce_0072 | Putative RNA-binding S4 protein. | UPF YGGT-containing protein. | 0.659 |
| cce_1336 | cce_0650 | cce_1336 | cce_0650 | Putative RNA-binding S4 protein. | UPF YGGT-containing protein. | 0.728 |
| cce_1336 | cce_3464 | cce_1336 | cce_3464 | Putative RNA-binding S4 protein. | Hypothetical protein. | 0.533 |
| cce_1336 | ftsZ | cce_1336 | cce_1314 | Putative RNA-binding S4 protein. | Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.692 |
| cce_1336 | mrnC | cce_1336 | cce_1800 | Putative RNA-binding S4 protein. | Putative Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.634 |
| cce_1336 | sepF | cce_1336 | cce_2614 | Putative RNA-binding S4 protein. | Unknown; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.731 |
| cce_2715 | cce_0072 | cce_2715 | cce_0072 | UPF0001-containing protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | UPF YGGT-containing protein. | 0.599 |
| cce_2715 | cce_0650 | cce_2715 | cce_0650 | UPF0001-containing protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | UPF YGGT-containing protein. | 0.599 |
| cce_2715 | cce_3464 | cce_2715 | cce_3464 | UPF0001-containing protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Hypothetical protein. | 0.506 |
| cce_2715 | sepF | cce_2715 | cce_2614 | UPF0001-containing protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Unknown; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.815 |
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