STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2629Unknown; Contains TPR_1 tetratricopeptide repeat domains. (414 aa)    
Predicted Functional Partners:
cce_0764
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
 
     0.769
cce_2105
Hypothetical protein; Contains tetratricopeptide repeat domains.
  
     0.741
cce_2288
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
 
    
0.704
cce_2622
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.704
cce_2278
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.702
upp
Uracil phosphoribosyltransferase; Belongs to the UPRTase family.
       0.581
cce_2852
Unknown; Contains a TPR-like helical domain.
 
   0.547
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.505
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.452
cce_2631
Unknown.
       0.452
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.