STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2636Unknown. (255 aa)    
Predicted Functional Partners:
cce_2635
Hypothetical protein; Contains a cupredoxin domain.
 
     0.912
pilC
Pilin biogenesis protein.
  
  
 0.707
hofD
Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.681
cce_3749
Unknown.
  
     0.618
cce_3748
Unknown.
  
     0.602
cce_2634
Hypothetical protein; Contains an FeoA domain.
       0.601
cce_4656
Unknown.
  
     0.591
cce_3345
Conserved hypothetical protein.
  
     0.590
comE
Competence protein.
  
  
 0.566
cce_4731
Hypothetical protein; Contains a metallophosphoesterase domain.
  
     0.531
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.