Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpcAPhycocyanin alpha subunit. (162 aa)    
Predicted Functional Partners:
cpcB
Phycocyanin beta subunit.
 
 
0.999
cpcC2
Phycocyanin associated linker protein; Belongs to the phycobilisome linker protein family.
 
 
 0.999
cpcC1
Phycocyanin associated linker protein; Belongs to the phycobilisome linker protein family.
 
 
 0.999
cpcD
Phycocyanin associated linker protein.
 
 
 0.999
cpcG
Phycobilisome rod-core linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 0.999
apcE
Phycobilisome core-membrane linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 
 0.997
apcC
Phycobilisome LC linker polypeptide; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.996
cpcE
Phycocyanin alpha phycocyanobilin lyase.
 
  
 0.995
cpcF
Phycocyanin alpha-subunit phycocyanobilin lyase.
 
  
 0.990
apcF
Phycobilisome core component.
  
 
 
0.976
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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