Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2664Hypothetical protein; Contains a cupin, RmlC-type domain. (157 aa)    
Predicted Functional Partners:
cce_2061
Mannose-1-phosphate guanyltransferase.
  
 
 0.870
rfbA
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.859
ugd
UDP-glucose dehydrogenase.
  
  
 0.856
rfbB1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.855
cce_0152
Putative dTDP-4-dehydrorhamnose reductase.
  
  
 0.778
rfbD
dTDP-6-deoxy-L-mannose-dehydrogenase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.778
cugP
Mannose-1-phosphate guanyltransferase; Catalyzes the formation of UDP-glucose, from UTP and glucose 1-phosphate.
  
  
 0.629
cce_0965
Putative nucleotidyl transferase.
  
  
 0.629
cce_2663
Hypothetical protein; Contains a peptidase M23B domain.
       0.495
cce_0525
Unknown; Contains a glycosyl transferase, family 2 domain.
  
  
 0.444
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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