STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2678HlyD-family secretion protein. (577 aa)    
Predicted Functional Partners:
hetC
ABC transporter ATP-binding protein.
 
 0.865
cce_2672
Conserved hypothetical protein.
 
     0.757
hlyB2
Toxin secretion ABC transporter ATP-binding protein.
 
 0.727
cce_2355
Toxin secretion ABC transporter ATP-binding protein, HlyB family.
 
 0.725
hlyB1
Toxin secretion ABC transporter ATP-binding protein.
 
 0.701
cce_2195
Hypothetical protein; Contains a hemolysin-type calcium-binding region.
  
    0.686
cce_0891
Unknown; Contains an outer membrane efflux protein domain.
  
 
 0.685
cce_5091
Hemolysin-type calcium-binding protein.
  
    0.574
cce_4332
Hemolysin-type calcium-binding protein.
  
    0.566
cce_0913
Putative peptidase.
  
    0.527
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.