STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
matE1DNA-damage-inducible/multi antimicrobial extrusion protein. (450 aa)    
Predicted Functional Partners:
cce_1843
Putative terpenoid synthase.
   
 
 0.676
crtB
Phytoene synthase.
   
 
 0.676
cce_2132
Glyceraldehyde-3-phosphate dehydrogenase, type I.
   
  
 0.625
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.625
rps1-1
30S ribosomal protein S1.
   
    0.608
rps1-2
30S ribosomal protein S1.
   
    0.608
cce_2746
Putative DoxX family protein.
 
    0.540
cce_4199
ATP-binding protein of ABC transporter.
  
  
 0.539
cce_4294
Unknown; Contains a GUN4-like domain.
  
     0.522
cce_2686
Unknown; Contains a FAD dependent oxidoreductase domain.
       0.495
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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