Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xisI2Probable fdxN element excision controlling factor protein. (111 aa)    
Predicted Functional Partners:
xisH2
Probable fdxN element excision controlling factor protein.
 
   
 0.950
xisH1
Probable fdxN element excision controlling factor protein.
 
   
 0.793
xisH4
Putative fdxN element excision controlling factor protein.
 
     0.783
xisH3
Putative fdxN element excision controlling factor protein.
  
     0.775
cce_2204
Hypothetical protein.
  
     0.660
cce_2704
Unknown; Contains DUF820.
 
     0.656
cce_2965
CHP1784-containing protein.
  
     0.614
cce_4773
Unknown; Contains a HNH endonuclease domain.
  
     0.545
cce_4925
Hypothetical protein; Contains a Type I restriction enzyme R protein, N terminus domain.
  
     0.492
cce_1666
Contains a GTP-binding protein, HSR1-related domain.
  
     0.402
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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