Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2710Unknown. (100 aa)    
Predicted Functional Partners:
amt1
Ammonium/methylammonium permease.
  
 
 0.912
cmpC
Bicarbontate transport system ATP-binding protein.
   
 
 0.839
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.673
cce_2712
Hypothetical protein.
       0.661
glsF
Ferredoxin-dependent glutamate synthase.
  
  
 0.632
cce_4389
Unknown.
  
     0.561
sbtA
Sodium dependent bicarbonate transporter.
 
 
 
 0.542
glnA
Glutamine synthetase, glutamate--ammonia ligase.
  
 
 0.513
desC2
Fatty acid desaturase.
       0.495
cce_2714
FAD linked oxidase.
       0.495
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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