STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2724Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (275 aa)    
Predicted Functional Partners:
putA
Bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.705
rps6
30s ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
    0.548
cce_1311
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.532
cce_3078
Polyketide synthase.
  
 
 0.532
cce_3079
Probable polyketide synthase.
  
 
 0.518
cce_2219
Hypothetical protein; Contains a GCN5-related N-acetyltransferase domain.
 
      0.469
gltA
Citrate synthase; Belongs to the citrate synthase family.
   
    0.459
cce_2680
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.423
cce_3229
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.423
gabD
Succinate-semialdehyde dehydrogenase (NADP+).
  
 
 0.423
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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