Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2746Putative DoxX family protein. (177 aa)    
Predicted Functional Partners:
cce_5157
Hypothetical protein.
  
    0.555
matE1
DNA-damage-inducible/multi antimicrobial extrusion protein.
 
    0.532
cce_4642
Probable alkaline phosphatase.
  
    0.508
cce_4357
UbiE/COQ5 methyltransferase.
  
     0.499
cce_2304
Hypothetical protein; Contains tetratricopeptide repeat domains.
  
     0.497
cce_4098
Putative amidohydrolase 2.
  
     0.468
matE2
DNA-damage-inducible/multi antimicrobial extrusion protein.
 
    0.463
cce_4294
Unknown; Contains a GUN4-like domain.
  
     0.450
cce_3356
CHP374-containing protein.
  
     0.426
cce_4093
Unknown.
  
     0.425
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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