Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2760Unknown; Contains a von Willebrand factor, type A domain. (423 aa)    
Predicted Functional Partners:
cce_4742
FraH-like protein.
 
   
 0.797
cce_1894
Conserved hypothetical protein.
  
   
 0.718
cce_2942
Unknown.
  
     0.680
cce_2761
UPF0027-containing protein.
 
   
 0.663
cce_1000
Unknown; Contains a SMAD/FHA domain.
 
   
 0.620
cce_2033
Hypothetical protein; Contains a Glycosyl transferase, family 39 domain.
  
     0.540
cce_0324
Unknown; Contains DUF58.
 
     0.527
cce_4143
Unknown.
  
     0.521
cce_4688
Unknown.
  
     0.517
cce_2045
Unknown; Contains a TPR-like helical domain.
 
     0.511
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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