Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2767Unknown; Contains a phytoene dehydrogenase-related protein domain. (526 aa)    
Predicted Functional Partners:
cce_2766
Hypothetical protein.
 
     0.941
chlD
Magnesium chelatase, ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.635
cce_2765
Probable glutaminase; Belongs to the glutaminase family.
       0.621
cce_1636
Unknown.
  
     0.535
cce_1093
Hypothetical protein; Contains a TROVE domain.
  
     0.512
cce_0301
Unknown; Contains glutathione S-transferase, C-terminal-like and Thioredoxin fold domains.
  
     0.484
cce_1925
Contains a GTP-binding protein, HSR1-related domain.
  
     0.482
cce_5094
Hypothetical protein.
  
     0.453
cce_1843
Putative terpenoid synthase.
  
  
 0.429
crtB
Phytoene synthase.
  
  
 0.429
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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