Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cce_2782LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (333 aa)    
Predicted Functional Partners:
psbV
Photosystem II extrinsic protein, cytochrome c550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.714
rpoZ
Putative RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.712
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 
 0.701
rpoZ-2
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.639
glsF
Ferredoxin-dependent glutamate synthase.
     
 0.628
cce_3383
Unknown.
  
     0.618
cce_2781
Putative NnrU protein.
 
     0.610
cce_3652
Conserved hypothetical protein.
  
     0.608
rpl32
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.577
apcB
Allophycocyanin beta subunit.
  
     0.574
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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