Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2784Unknown; Contains a DnaJ N-terminal four helical 'J' domain and TPR-like helical domains. (304 aa)    
Predicted Functional Partners:
hoxF
NADH dehydrogenase I chain F.
   
  0.863
cce_0149
Probable protein phosphatase.
  
 
 0.845
cce_3078
Polyketide synthase.
  
 
 0.836
cce_3079
Probable polyketide synthase.
  
 
 0.803
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.793
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 
 0.779
cce_1633
Unknown; Contains a TolB, C-terminal domain.
  
   
 0.767
cce_3505
Unknown; Contains a TolB, C-terminal domain.
  
   
 0.767
cce_0967
Hypothetical protein; Contains a recombinase domain.
  
  
 0.757
cce_2501
Conserved hypothetical protein.
  
     0.757
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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