STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2788Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, and SMAD/FHA domain. (703 aa)    
Predicted Functional Partners:
cce_1555
Unknown; Contains a GAF domain.
 
  
 0.908
cce_0657
Two-component response regulator.
    
 0.774
amt1
Ammonium/methylammonium permease.
 
      0.739
cce_4097
Two-component sensor serine/threonine kinase.
 
 
 0.715
cce_4660
Hypothetical protein; Contains a WD-repeat, a PAS region and a response regulator receiver domain.
  
 
 0.714
cce_2787
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, and SMAD/FHA domain.
 
    
0.712
cce_0656
Two-component hybrid sensor and regulator.
 
  
 0.704
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
 
 
0.704
cce_2243
Unknown; Contains a GGDEF domain, EAL domain, and a pass fold-4 domain.
 
 
0.684
cce_2611
Hypothetical protein; Contains PAS, GGDEF, Response regulator receiver, and GAF domains.
 
 
0.676
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.