STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2821Unknown; Contains a UspA domain. (292 aa)    
Predicted Functional Partners:
cce_1684
Conserved hypothetical protein.
 
     0.603
cce_2720
Hypothetical protein.
  
     0.579
cce_4611
Unknown.
  
     0.557
cce_1646
Hypothetical protein; Contains a peptidase, archaeal and bacterial C-terminal domain.
  
    0.544
cce_4384
Unknown; Contains a SMAD/FHA domain.
  
     0.538
cce_3558
Two-component hybrid sensor and regulator.
 
  
 0.535
cce_1238
Conserved hypothetical protein.
  
     0.513
cce_4178
Hypothetical protein.
  
     0.508
cce_4274
Conserved hypothetical protein.
  
     0.504
cce_1683
Conserved hypothetical protein.
  
     0.494
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.