Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2846Hypothetical protein. (118 aa)    
Predicted Functional Partners:
cce_4948
Hypothetical protein; Contains DUF497.
 
   0.775
cce_3009
Hypothetical protein; Contains DUF497.
 
   0.727
cce_2831
Hypothetical protein; Contains DUF497.
 
   0.635
cce_4967
Unknown; Contains DUF497.
 
   0.617
cce_2845
Hypothetical protein.
       0.551
cce_2847
Hypothetical protein; Contains UPF0150.
       0.531
cce_2848
Hypothetical protein; Contains a YcfA domain.
       0.531
cce_3944
Hypothetical protein; Contains a Lambda repressor-like, DNA-binding domain.
  
     0.496
vapC
StbB-like plasmid stabilization protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.466
vapC2
Putative virulence associated protein C; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.410
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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