STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2852Unknown; Contains a TPR-like helical domain. (936 aa)    
Predicted Functional Partners:
cce_2853
Unknown.
   
 
 0.818
cce_0516
Glycosyl transferase, group 1.
   
 0.760
cce_2854
Probable glycosyl transferase.
 
     0.621
cce_2288
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
 
   0.578
cce_3632
Putative prenyltransferase.
 
 
   0.572
cce_0057
Hypothetical protein.
  
     0.554
cce_2629
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
 
   0.536
cce_2857
Hypothetical protein.
 
     0.501
cce_0588
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
 
   0.476
cce_0481
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
 
   0.459
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.