Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2853Unknown. (250 aa)    
Predicted Functional Partners:
cce_2852
Unknown; Contains a TPR-like helical domain.
   
 
 0.818
cce_0149
Probable protein phosphatase.
    
 
 0.756
cce_3078
Polyketide synthase.
  
 
 0.684
cce_3079
Probable polyketide synthase.
  
 
 0.655
cce_3055
Peptide synthetase.
  
 
 0.638
cce_1729
Putative carboxyphosphonoenolpyruvate phosphonomutase.
 
   
 0.596
cce_2657
Putative transketolase.
 
   
 0.573
cce_1466
Probable AMP-dependent synthetase and ligase.
  
 
 0.551
cce_2854
Probable glycosyl transferase.
       0.548
cce_3080
Polyketide synthase type I.
  
 
 0.529
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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