Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ald | cce_2871 | cce_0036 | cce_2871 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | 0.908 |
| ald | gcvP | cce_0036 | cce_2609 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.430 |
| ald | glyA | cce_0036 | cce_3951 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.762 |
| cce_2871 | ald | cce_2871 | cce_0036 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.908 |
| cce_2871 | gcvH | cce_2871 | cce_2643 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.916 |
| cce_2871 | gcvP | cce_2871 | cce_2609 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.934 |
| cce_2871 | gcvT | cce_2871 | cce_4346 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine. | 0.934 |
| cce_2871 | glcD | cce_2871 | cce_0061 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Glycolate oxidase subunit. | 0.904 |
| cce_2871 | glcF | cce_2871 | cce_3708 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Glycolate oxidase subunit (Fe-S) protein. | 0.905 |
| cce_2871 | glyA | cce_2871 | cce_3951 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.928 |
| cce_2871 | gpmB | cce_2871 | cce_2454 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. | 0.906 |
| cce_2871 | trpA | cce_2871 | cce_2130 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Tryptophan synthase alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.904 |
| cce_2871 | trpB | cce_2871 | cce_3134 | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | Tryptophan synthase beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.911 |
| gcvH | cce_2871 | cce_2643 | cce_2871 | Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | 0.916 |
| gcvH | gcvP | cce_2643 | cce_2609 | Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.999 |
| gcvH | gcvT | cce_2643 | cce_4346 | Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine. | 0.999 |
| gcvH | glyA | cce_2643 | cce_3951 | Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.975 |
| gcvP | ald | cce_2609 | cce_0036 | Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.430 |
| gcvP | cce_2871 | cce_2609 | cce_2871 | Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V. | 0.934 |
| gcvP | gcvH | cce_2609 | cce_2643 | Glycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.999 |
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