STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2876Unknown; Contains an alpha amylase, catalytic region. (983 aa)    
Predicted Functional Partners:
cce_1627
Unknown; Contains a glycoside hydrolase, family 57 domain.
 
     0.769
cce_3446
Unknown.
 
     0.647
cce_2741
Unknown.
  
     0.592
cce_4063
Unknown.
  
     0.525
cce_2875
Hypothetical protein.
       0.515
glgA1
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.482
cce_3609
Hypothetical protein; Contains DUF820.
  
     0.451
glsF
Ferredoxin-dependent glutamate synthase.
     
 0.438
cce_3587
Probable zinc-binding oxidoreductase.
  
    0.412
cce_0839
Putative Na-K-Cl cotransporter.
   
 0.403
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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