Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2886Unknown. (264 aa)    
Predicted Functional Partners:
trpG
Anthranilate synthase component II.
     
 0.794
dgkA
Diacylglycerol kinase.
       0.668
cce_1724
Unknown.
  
     0.627
cce_1908
Conserved hypothetical protein.
  
     0.627
cce_2118
Conserved hypothetical protein.
  
     0.622
cce_0291
Unknown; Contains a heat shock protein DnaJ, N-terminal domain.
  
 
   0.535
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.527
cce_2890
Conserved hypothetical protein.
       0.526
cce_4654
Glycosyl transferase, group 1.
  
     0.517
cce_2029
Unknown; Contains an OstA-like protein domain.
  
     0.494
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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