Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2912Hypothetical protein. (596 aa)    
Predicted Functional Partners:
pilC
Pilin biogenesis protein.
 
 
 0.981
cce_2840
Putative HofG-like general secretion pathway protein.
 
 
 0.894
hofD
Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.881
pilM
Type IV pilus assembly protein.
 
 
 
 0.879
cce_1615
Putative HofG-like general secretion pathway protein.
 
 
 0.840
pilT1
Twitching motility protein.
 
  
 0.809
pilT2
Twitching motility protein.
 
  
 0.809
hofG
Probable general secretion pathway protein G.
 
 
 0.794
comE
Competence protein.
  
  
 0.756
cce_3381
Putative HofG-like general secretion pathway protein.
 
 
 0.742
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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