Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2983Unknown; Contains a TPR-like helical domain. (470 aa)    
Predicted Functional Partners:
cce_3191
Hypothetical protein; Contains DUF1239.
  
   
 0.806
lpxC
UDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
    
 
 0.795
cce_2880
Conserved hypothetical protein.
  
     0.770
cce_3897
Unknown.
  
     0.766
cce_3393
Unknown.
 
   
 0.765
cce_1644
Conserved hypothetical protein.
  
     0.758
cce_1893
Unknown.
  
 
 
 0.755
cce_0812
Hypothetical protein.
  
     0.754
cce_0283
Conserved hypothetical protein.
  
     0.749
cce_2662
Conserved hypothetical protein.
  
     0.749
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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