Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
cce_3005Carboxypeptidase. (262 aa)    
Predicted Functional Partners:
cce_3444
Penicillin-binding protein.
     
 0.909
cce_3458
Penicillin binding protein, transpeptidase.
     
 0.909
dacB
Probable D-alanyl-D-alanine carboxypeptidase.
     
 0.907
cce_2331
Putative D-alanyl-D-alanine carboxypeptidase.
     
 0.907
cce_3531
Penicillin-binding protein 1A.
     
 0.904
cce_3004
Unknown; Contains a Zinc finger, SWIM-type domain.
       0.776
cce_3006
Putative soluble quinoprotein glucose dehydrogenase.
       0.553
ddlA
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.476
cphA
Cyanophycin synthetase; Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer); In the C-terminal section; belongs to the MurCDEF family.
     
 0.420
cce_4199
ATP-binding protein of ABC transporter.
      
 0.415
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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