Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cce_3039Ferrichrome iron receptor. (890 aa)    
Predicted Functional Partners:
cce_3668
Unknown; Contains a 2OG-Fe(II) oxygenase domain.
 
  
 0.858
cce_3038
Hypothetical protein.
       0.773
lolD
ATP-binding protein of ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.718
cce_3041
Conserved hypothetical protein.
 
     0.622
cce_1035
Putative Iron permease FTR1.
   
  
 0.616
cce_3042
Peptide synthetase.
  
  
 0.612
cce_1466
Probable AMP-dependent synthetase and ligase.
   
  
 0.547
exbB2
Putative biopolymer transport protein.
 
  
 0.488
cce_3052
Hypothetical protein; Contains a TonB, C-terminal domain.
 
   
 0.481
cce_1160
Putative biopolymer transport protein, ExbD/TolR family.
 
  
 0.464
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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