Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cce_1035 | cce_3039 | cce_1035 | cce_3039 | Putative Iron permease FTR1. | Ferrichrome iron receptor. | 0.660 |
| cce_3038 | cce_3039 | cce_3038 | cce_3039 | Hypothetical protein. | Ferrichrome iron receptor. | 0.773 |
| cce_3038 | lolD | cce_3038 | cce_3040 | Hypothetical protein. | ATP-binding protein of ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. | 0.718 |
| cce_3039 | cce_1035 | cce_3039 | cce_1035 | Ferrichrome iron receptor. | Putative Iron permease FTR1. | 0.660 |
| cce_3039 | cce_3038 | cce_3039 | cce_3038 | Ferrichrome iron receptor. | Hypothetical protein. | 0.773 |
| cce_3039 | cce_3668 | cce_3039 | cce_3668 | Ferrichrome iron receptor. | Unknown; Contains a 2OG-Fe(II) oxygenase domain. | 0.844 |
| cce_3039 | dnaN1 | cce_3039 | cce_1864 | Ferrichrome iron receptor. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.673 |
| cce_3039 | dnaN2 | cce_3039 | cce_4866 | Ferrichrome iron receptor. | DNA polymerase III beta subunit. | 0.673 |
| cce_3039 | hicA | cce_3039 | cce_5038 | Ferrichrome iron receptor. | Probable HicA protein. | 0.673 |
| cce_3039 | hicB | cce_3039 | cce_5037 | Ferrichrome iron receptor. | Probable HicB protein. | 0.673 |
| cce_3039 | hypA | cce_3039 | cce_2902 | Ferrichrome iron receptor. | Hydrogenase expression/synthesis; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.673 |
| cce_3039 | hypB | cce_3039 | cce_2903 | Ferrichrome iron receptor. | Hydrogenase accessory protein. | 0.673 |
| cce_3039 | lolD | cce_3039 | cce_3040 | Ferrichrome iron receptor. | ATP-binding protein of ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. | 0.718 |
| cce_3668 | cce_3039 | cce_3668 | cce_3039 | Unknown; Contains a 2OG-Fe(II) oxygenase domain. | Ferrichrome iron receptor. | 0.844 |
| dnaN1 | cce_3039 | cce_1864 | cce_3039 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Ferrichrome iron receptor. | 0.673 |
| dnaN1 | dnaN2 | cce_1864 | cce_4866 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III beta subunit. | 0.925 |
| dnaN1 | hicA | cce_1864 | cce_5038 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Probable HicA protein. | 0.673 |
| dnaN1 | hicB | cce_1864 | cce_5037 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Probable HicB protein. | 0.673 |
| dnaN1 | hypA | cce_1864 | cce_2902 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hydrogenase expression/synthesis; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.670 |
| dnaN1 | hypB | cce_1864 | cce_2903 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hydrogenase accessory protein. | 0.442 |
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