Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cce_3041Conserved hypothetical protein. (273 aa)    
Predicted Functional Partners:
cce_3033
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
    0.730
cce_3043
Putative thioester reductase.
 
  
 0.728
cce_4675
Hypothetical protein; Contains Serralysin-like metalloprotease, C-terminal and Peptidase, archaeal and bacterial C-terminal domains.
  
    0.711
cce_3069
Unknown.
  
     0.705
shc
Squalene-hopene-cyclase.
   
 
 0.626
cce_3039
Ferrichrome iron receptor.
 
     0.622
cce_3042
Peptide synthetase.
     
 0.600
cce_0699
Hypothetical protein.
  
     0.575
lolD
ATP-binding protein of ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.565
cce_1843
Putative terpenoid synthase.
  
 
 0.547
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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