STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3045Aminotransferase class-III, putative glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (496 aa)    
Predicted Functional Partners:
cce_3078
Polyketide synthase.
   
 0.982
cce_3079
Probable polyketide synthase.
   
 0.976
cce_3080
Polyketide synthase type I.
   
 0.976
cce_3761
Polyketide synthase.
   
 0.973
cce_3042
Peptide synthetase.
   
 0.972
cce_3074
Polyketide synthase type I.
   
 0.971
cce_3055
Peptide synthetase.
   
 0.967
cce_3050
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.959
cce_3034
Peptide synthetase.
   
 0.957
cce_3073
Peptide synthetase.
  
 0.957
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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