STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB2Putative biopolymer transport protein. (217 aa)    
Predicted Functional Partners:
cce_3053
Putative biopolymer transport protein, ExbD/TolR family.
 
 
 0.987
cce_3052
Hypothetical protein; Contains a TonB, C-terminal domain.
 
 
 0.935
exbD
Probable biopolymer transport protein.
 
 
 0.924
cce_1160
Putative biopolymer transport protein, ExbD/TolR family.
 
 
 0.848
cce_1161
Putative biopolymer transport protein, ExbD/TolR family.
 
 
 0.821
cce_3051
Hypothetical protein; Contains a MFS 1 domain.
     
 0.710
cce_2027
Putative permease YjgP/YjgQ.
  
     0.697
cce_0608
Unknown.
  
 
 0.694
cce_2028
ATP-binding protein of ABC transporter.
  
   
 0.675
cce_1246
Putative permease YjgP/YjgQ.
  
     0.661
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.