STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3056ATP-binding protein of ABC transporter. (298 aa)    
Predicted Functional Partners:
cce_2230
ATP-binding protein of ABC transporter.
 
  
0.909
cce_2028
ATP-binding protein of ABC transporter.
    
0.904
cce_3081
Hypothetical protein.
 
 
   0.793
cmpD
Bicarbontate transport system ATP-binding protein.
 
     
0.784
cce_3642
Putative ABC-2 type transport system permease protein.
 
 
 0.767
cce_3057
Probable ABC transporter permease protein.
      0.731
cce_3058
Hypothetical protein.
       0.723
cce_4113
devA-like ABC transporter ATP-binding protein.
 
   
0.722
cce_0161
Putative membrane protein.
  
 
 0.646
cce_3055
Peptide synthetase.
    
 0.638
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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