STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3058Hypothetical protein. (824 aa)    
Predicted Functional Partners:
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
 
 
 0.837
cce_3057
Probable ABC transporter permease protein.
   
   0.779
cce_3056
ATP-binding protein of ABC transporter.
       0.723
cce_3059
HlyD-family secretion protein.
 
    0.673
cce_3055
Peptide synthetase.
  
 
 0.641
hlyB2
Toxin secretion ABC transporter ATP-binding protein.
 
  
 0.562
cce_2192
Putative HlyD-family secretion protein.
 
  
 0.540
cce_2241
Hypothetical protein; Contains a Filamentous haemagglutinin, N-terminal domain.
 
 
 0.538
cce_5047
Hypothetical protein; Contains a bacterial surface antigen (D15) and Polypeptide-transport-associated, ShlB-type domain.
  
     0.519
cce_5091
Hemolysin-type calcium-binding protein.
  
   0.513
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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