Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3058Hypothetical protein. (824 aa)    
Predicted Functional Partners:
cce_3057
Probable ABC transporter permease protein.
       0.773
cce_3056
ATP-binding protein of ABC transporter.
       0.723
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
 
 
 0.722
cce_3059
HlyD-family secretion protein.
 
    0.670
cce_3055
Peptide synthetase.
  
 
 0.581
hlyB2
Toxin secretion ABC transporter ATP-binding protein.
 
  
 0.551
cce_2192
Putative HlyD-family secretion protein.
 
  
 0.529
cce_5047
Hypothetical protein; Contains a bacterial surface antigen (D15) and Polypeptide-transport-associated, ShlB-type domain.
  
     0.519
cce_2242
Hypothetical protein; Contains a bacterial surface antigen (D15) domain.
  
     0.506
cce_0323
Hypothetical protein; Contains a bacterial surface antigen (D15) and Polypeptide-transport-associated, ShlB-type domain.
  
     0.504
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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