STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps21-130S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (62 aa)    
Predicted Functional Partners:
rps16
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.968
rps20
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.968
rpl21
50s ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.967
rpl28
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.966
rps15
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.964
rpl13
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.963
rpl32
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.962
rpl19
50s ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.961
rpl27
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.961
rpl25
50S ribosomal protein L25; Belongs to the bacterial ribosomal protein bL25 family.
   
 
 0.960
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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