Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| bicA | rbcL | cce_3483 | cce_3166 | Putative bicarbonate transporter. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.780 |
| cce_0753 | cce_1821 | cce_0753 | cce_1821 | Probable HAD-superfamily hydrolase, subfamily IA, variant 1. | Putative HAD-superfamily hydrolase, subfamily IA. | 0.948 |
| cce_0753 | rbcL | cce_0753 | cce_3166 | Probable HAD-superfamily hydrolase, subfamily IA, variant 1. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.911 |
| cce_0753 | rbcS | cce_0753 | cce_3164 | Probable HAD-superfamily hydrolase, subfamily IA, variant 1. | Ribulose bisphosphate carboxylase small subunit. | 0.909 |
| cce_1821 | cce_0753 | cce_1821 | cce_0753 | Putative HAD-superfamily hydrolase, subfamily IA. | Probable HAD-superfamily hydrolase, subfamily IA, variant 1. | 0.948 |
| cce_1821 | rbcL | cce_1821 | cce_3166 | Putative HAD-superfamily hydrolase, subfamily IA. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.911 |
| cce_1821 | rbcS | cce_1821 | cce_3164 | Putative HAD-superfamily hydrolase, subfamily IA. | Ribulose bisphosphate carboxylase small subunit. | 0.909 |
| cce_1922 | ccmM | cce_1922 | cce_4280 | Unknown. | Carbon dioxide concentrating mechanism protein. | 0.835 |
| cce_1922 | rbcL | cce_1922 | cce_3166 | Unknown. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.936 |
| cce_1922 | rbcS | cce_1922 | cce_3164 | Unknown. | Ribulose bisphosphate carboxylase small subunit. | 0.720 |
| cce_1922 | rbcX | cce_1922 | cce_3165 | Unknown. | Chaperonin-like protein RbcX. | 0.955 |
| cce_2521 | pgk | cce_2521 | cce_4219 | Unknown. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.823 |
| cce_2521 | prk | cce_2521 | cce_0995 | Unknown. | Phosphoribulokinase. | 0.817 |
| cce_2521 | rbcL | cce_2521 | cce_3166 | Unknown. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.900 |
| cce_2521 | rbcS | cce_2521 | cce_3164 | Unknown. | Ribulose bisphosphate carboxylase small subunit. | 0.900 |
| ccmM | cce_1922 | cce_4280 | cce_1922 | Carbon dioxide concentrating mechanism protein. | Unknown. | 0.835 |
| ccmM | pgk | cce_4280 | cce_4219 | Carbon dioxide concentrating mechanism protein. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.509 |
| ccmM | rbcL | cce_4280 | cce_3166 | Carbon dioxide concentrating mechanism protein. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.996 |
| ccmM | rbcS | cce_4280 | cce_3164 | Carbon dioxide concentrating mechanism protein. | Ribulose bisphosphate carboxylase small subunit. | 0.939 |
| ccmM | rbcX | cce_4280 | cce_3165 | Carbon dioxide concentrating mechanism protein. | Chaperonin-like protein RbcX. | 0.809 |
page 1 of 3