STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. (471 aa)    
Predicted Functional Partners:
rbcS
Ribulose bisphosphate carboxylase small subunit.
 
 0.999
rbcX
Chaperonin-like protein RbcX.
   
 
 0.990
ccmM
Carbon dioxide concentrating mechanism protein.
  
 
 0.990
prk
Phosphoribulokinase.
 
  
 0.963
cce_1922
Unknown.
    
 
 0.941
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.934
cce_0753
Probable HAD-superfamily hydrolase, subfamily IA, variant 1.
     
 0.900
cce_1821
Putative HAD-superfamily hydrolase, subfamily IA.
     
 0.900
cce_2521
Unknown.
     
  0.900
ccmN
Carbon dioxide concentrating mechanism protein.
    
 
 0.865
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (18%) [HD]