Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3210Unknown. (468 aa)    
Predicted Functional Partners:
cce_3730
Unknown.
  
     0.756
cce_1633
Unknown; Contains a TolB, C-terminal domain.
  
    0.698
cce_3427
Conserved hypothetical protein.
  
     0.692
cce_3936
Unknown.
  
     0.673
cce_4206
Hypothetical protein; Contains a NLP/P60 domain.
  
     0.671
cce_0259
Unknown.
  
     0.652
cce_2033
Hypothetical protein; Contains a Glycosyl transferase, family 39 domain.
  
     0.645
cce_2150
Hypothetical protein; Contains a transglutaminase-like domain.
  
     0.628
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
 
 
 0.619
cce_4418
Unknown.
  
     0.613
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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