STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3228Heterodisulfide reductase, subunit B. (298 aa)    
Predicted Functional Partners:
sdhB
Succinate dehydrogenase iron-sulphur protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 
 0.984
sdhA
Succinate dehydrogenase flavoprotein subunit.
 
 
 0.963
sucD
Putative succinyl-CoA synthetase alpha chain.
 
  
 0.923
sucC
Putative succinyl-CoA synthetase beta chain.
  
  
  0.922
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
  0.908
gabD
Succinate-semialdehyde dehydrogenase (NADP+).
   
 
  0.901
hupL
[NiFe] uptake hydrogenase large subunit.
  
 
 0.870
aspC
Aspartate aminotransferase.
   
 
  0.801
argH
L-argininosuccinate lyase.
     
  0.800
cce_3352
Unknown; Contains a coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal domain.
 
 
 0.670
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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