Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3237Glycosyl transferase, family 2. (476 aa)    
Predicted Functional Partners:
cce_1989
Hypothetical protein; Contains a short-chain dehydrogenases/reductase domain.
   
 0.915
cce_0001
Hypothetical protein.
   
 
  0.901
cce_0837
Conserved hypothetical protein.
   
 
  0.901
cce_4887
Hypothetical protein.
   
 
  0.901
cce_1852
Polysaccharide deacetylase.
 
 
  
 0.900
dgkA
Diacylglycerol kinase.
     
  0.900
cce_4134
Hypothetical protein; Contains a Lipase, class 2 domain.
   
 
 0.900
cce_1920
Putative glycosyl transferase.
  
     0.599
cce_3238
Hypothetical protein.
       0.515
cce_2611
Hypothetical protein; Contains PAS, GGDEF, Response regulator receiver, and GAF domains.
 
  
 0.514
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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