STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amt1Ammonium/methylammonium permease. (504 aa)    
Predicted Functional Partners:
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.999
glsF
Ferredoxin-dependent glutamate synthase.
 
  
 0.942
cce_2710
Unknown.
  
 
 0.912
cce_2937
Unknown.
  
 
 0.912
cce_2243
Unknown; Contains a GGDEF domain, EAL domain, and a pass fold-4 domain.
    
 0.905
cce_1877
Hypothetical protein; Contains a PAS domain, GGDEF domain, EAL domain, Response regulator receiver domain, CheY-like domain, and a PAS fold domain.
 
    
 0.898
nirA
Ferredoxin-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
      
 0.787
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
    
 0.784
modA
Molybdenum ABC transporter, periplasmic binding protein.
   
  
 0.765
cce_4709
Unknown; Contains a GGDEF domain, EAL domain, and PAS fold-3 domain.
 
    
 0.748
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.